Special Theme issue on  ‘Within-host dynamics of infection: from ecological insights to evolutionary predictions,’ compiled and edited by Olivier Restif and Andrea L. Graham in Philosophical Transactions of the Royal Society B. Open access during November. 

  • Introduction:

    Within-host dynamics of infection: from ecological insights to evolutionary predictions

    Olivier Restif, Andrea L. Graham
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    Research article:

    How is the effectiveness of immune surveillance impacted by the spatial distribution of spreading infections?

    Ulrich D. Kadolsky, Andrew J. Yates

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  • Opinion piece:

    Estimating T-cell repertoire diversity: limitations of classical estimators and a new approach

    Daniel J. Laydon, Charles R. M. Bangham, Becca Asquith
  • Research article:

    Effects of neutralizing antibodies on escape from CD8+ T-cell responses in HIV-1 infection
    Paul S. Wikramaratna, José Lourenço, Paul Klenerman, Oliver G. Pybus, Sunetra Gupta
  • Review article:

    The within-host dynamics of African trypanosome infections

    Keith R. Matthews, Richard McCulloch, Liam J. Morrison
  • Review article:

    Within-host competitive interactions as a mechanism for the maintenance of parasite diversity

    Farrah Bashey
  • Research article:

    Within-host competition between Borrelia afzelii ospC strains in wild hosts as revealed by massively parallel amplicon sequencing
    Maria Strandh, Lars Råberg
  • Research article:

    Evaluating the within-host fitness effects of mutations fixed during virus adaptation to different ecotypes of a new host

    Julia Hillung, José M. Cuevas, Santiago F. Elena
  • Research article:

    The evolution of bacterial resistance against bacteriophages in the horse chestnut phyllosphere is general across both space and time

    Britt Koskella, Nicole Parr
  • Research article:

    Interactions between multiple helminths and the gut microbiota in wild rodents

    Jakub Kreisinger, Géraldine Bastien, Heidi C Hauffe, Julian Marchesi, Sarah E Perkins

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  • Review article:

    Suppression of inflammation by helminths: a role for the gut microbiota?

    Paul Giacomin, John Croese, Lutz Krause, Alex Loukas, Cinzia Cantacessi
  • Review article:

    The role of the local microbial ecosystem in respiratory health and disease

    Wouter A. A. de Steenhuijsen Piters, Elisabeth A. M. Sanders, Debby Bogaert
  • Review article:

    Building the microbiome in health and disease: niche construction and social conflict in bacteria

    Luke McNally, Sam P. Brown
  • Review article:

    The tortoise or the hare? Impacts of within-host dynamics on transmission success of arthropod-borne viruses

    Benjamin M. Althouse, Kathryn A. Hanley
  • Research article:

    Avian malaria: a new lease of life for an old experimental model to study the evolutionary ecology of Plasmodium
    Romain Pigeault, Julien Vézilier, Stéphane Cornet, Flore Zélé, Antoine Nicot, Philippe Perret, SylvainGandon, Ana Rivero
  • Opinion piece:

    Crossing the scale from within-host infection dynamics to between-host transmission fitness: a discussion of current assumptions and knowledge

    Andreas Handel, Pejman Rohani
  • Research article:

    From within-host interactions to epidemiological competition: a general model for multiple infections

    Mircea T. Sofonea, Samuel Alizon, Yannis Michalakis
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