The Evolution & Medicine Review
The Night before Fabmas

The Night before Fabmas

A Christmas Poem, by The FAB [F-elix (Breden), A-rne (Mooers), B-ernie (Crespi)]. Evolutionary Biology lab group at Simon Fraser University, as communicated by Bernie

‘Twas the night before Fabmas, and all through the roomNot a creature was stirring, not even on ZoomThe stockings were hung by the laptop with care,In hopes that Sir Darwinus soon would be there;

The children were nestled all safe in their beds,While visions of booster-shots danced in their heads;And mom in her faceshield and I in my mask,Had just settled in for more research on vaxx,

When there on our screen there arose such a clatter,I sprang from my browser to see what’s the matter.Away from my Windows I dove like a flash,VP-ed the network, deleted the cache.

DNA on the screen of the downloaded dataGave the lustre of breakthrough to omicron beta   When, what to my wondering eyes should regeagle,But an HMS ship, and eight tiny reinbeagle

With a little old captain, so live and amok,I knew in a moment it must be Sir ChuckMore rapid than twitter his coursers they came,And he whistled, and shouted, and called them by name;

“Now, HUXLEY! now, HOOKER! now, HENSLOW ERASMAGE!On, LYELL! on FITZROY! on, OWEN and BABBAGE!To the top of the tree! To the true adaptations!Evolve away! volve away! Change all our nations!”

As viruses that before epidemes fly,When they meet with an obstacle, R-zo to the sky,So up to the case-top the coursers they flew,With a laptop of models, and Darwinus too.

And then, in a twinkling, I heard on the roofThe barking and yelping of reinbeagle woof.As I drew in my hand, and was turning around,When right down my router Chuck came with a bound.

He was dressed all in fur, from his head to his foot,And his clothes were all tarnished with virus kaput;A bundle of data he had on his back,And he looked full immune from all viral attack.

He spoke not a word, but went straight to his work,And solved all our problems of virus berserkAnd laying his finger aside of his nose,And giving a nod, up the datstream he rose;

Sprang to his reinbeagles, to his team gave a whistle,And away they all flew like they’re nuclear fissile,                       

 But I heard him exclaim, ‘ere he beamed out of sight,HAPPY FABMAS TO ALL, AND TO ALL A GOOD-NIGHT!

What hunter-gatherers can teach us about exercise

What hunter-gatherers can teach us about exercise

David Raichlen

This is the second of our op-ed features, contributed by David Raichlen, Associate Professor in the School of Anthropology at the University of Arizona.

What hunter-gatherers can teach us about exercise.

Exercise is beneficial to health. This may be the most obvious statement you will ever read on The Evolution & Medicine Review. But knowing this information does not seem to influence behavior. Less that 5% of adults in the United States regularly meet recommendations for daily physical activity – approximately 150 minutes per week (Troiano et al., 2008). However, simply repeatedly announcing the benefits of regular exercise is not proving a successful strategy for changing our behaviour. So, what would be more effective and can evolutionary medicine help?

Recent theoretical work by Daniel Lieberman (Harvard University), has provided much needed nuance to the discussion, allowing us to consider more carefully how an evolutionary perspective may help us alter behavior. In addition, new relevant data are available from work on exercise patterns in modern day hunter-gatherers. With collaborators Brian Wood (Yale University) and Herman Pontzer (Hunter College), I have examined physical activity patterns in people living lifestyles similar, in many ways, to those of our ancestors, and we can use these datasets to help model our physiological evolution. Figuring out how much and what kind of exercise we need requires understanding both our unique evolutionary history, and how patterns of activity in our ancestors may have affected the evolution of human physiology. There is much more evolutionary physiologists need to investigate and debate, in particular how best to apply evolutionary theory to practical prescriptions for the public, but there is also much we already know.

To begin, we need to better understand how and why our evolutionary history may lead us to derive physiological benefits from exercise. Daniel Lieberman has written extensively on this topic in his recent book, “The Story of the Human Body”, and in a recent review article, “Is exercise really medicine? An evolutionary perspective”. In these works, Lieberman introduces the perspective that exercise represents a kind of paradox. Nearly two million years ago, humans shifted to a novel hunter-gathering pattern of foraging that required intense aerobic effort to find food. Our physiology has become adapted to respond to this physical activity-induced stress in ways that increase capacity: increased bone mass, and increased vascular elasticity, for example. However, our bodies are also adapted to reduce energy expenditure when possible, through rest or through reductions in physiological capacity. This makes good evolutionary sense since energy expended must be replenished through foraging, and energy not spent on activity can be used to improve reproductive success. However, the longer we remain in sedentary and inactive states, the greater the reductions in those stressors, and consequently we experience reductions in physiological capacity that are often associated in today’s world with morbidity – sarcopenia and cardiovascular disease, for example – and mortality.

Thus, Lieberman argues that we are not adapted to exercise for health benefits, per se, but that our physiology is adapted to respond to stress in a dose-dependent way. Paradoxically, reductions in capacity often associated with negative health outcomes today are actually adaptive in an evolutionary sense – all that saved energy, remember, could have been spent by our ancestors on improving their reproductive success. But in modern industrialized societies we gravitate towards the couch when we don’t need to be active, leaving many of us susceptible to chronic diseases associated with physiological capacity reductions including cardiovascular disease, osteoporosis, and perhaps even neurodegenerative diseases (although the jury is still out on this connection).

So, while we are not really adapted to exercise for health, our physiological health is improved by the increased capacity that occurs in response to physical activity. If this is the case, then how much exercise do we need to tax our systems in ways that will improve our health and well-being? The answer has remained elusive to public health researchers, with the best response being that some is better than none, and, up to a point, more aerobic exercise is better than less (O’Donovan et al., 2017). However, this is unsatisfying in many ways, and to provide more detailed prescriptions from an evolutionary perspective, we need to have a better understanding of the types of physiological stresses our bodies have been responding to throughout our evolutionary history. We can do this by beginning to look more carefully at physical activity levels in modern groups of hunter-gatherers that are still living in ways that bear some resemblance to the lifestyles of our ancestors.

Now come the major caveats. Living hunter-gatherers are not close models of hunter-gatherers in the past. There are differences in lifestyle, food sources, and access to medicine and technology that clearly affect activity and health today. In addition, it is simplistic to assume that patterns of exercise in hunter-gatherers are optimal for humans today. As Lieberman points out, we did not evolve to be healthy, we evolved to be reproductively successful. Thus, patterns of activity in hunter-gatherers may maximize reproductive success at the expense of optimal health. Finally, we did not stop evolving when many human populations left the hunting and gathering lifestyle for agriculture, and later for industrialized societies. Simply engaging in activity levels seen in hunter-gatherers may not be optimal to maintain health, despite the fact that they may be optimal for finding food. With these caveats in mind, we can delve into recent work that sheds light on activity levels in hunter-gatherers and consider how we might use these data to model activity in the evolutionary past and apply these studies to life today.

For many years, researchers have used observational data to estimate activity levels in modern day hunter-gatherers. However, these factorial-type models are notoriously inaccurate. Recent advances in wearable technologies have allowed physiologists to gain a more detailed perspective on activity levels in hunter-gatherers. Along with Herman Pontzer (Hunter College) and Brian Wood (Yale University), I have had the good fortune to work with the Hadza – hunter-gatherers living in Northern Tanzania. The Hadza inhabit a highly seasonal woodland-savannah habitat, composed of rocky, uneven terrain, and dominated by Acacia, Commiphora, and Baobab trees. The individuals we work with capture nearly all of their food from wild resources, including hunting large and small game, and gathering honey, tubers, berries, baobab fruit, and other plant foods (Marlowe, 2010). This lifestyle requires considerable movement during the day to hunt and gather foods, to collect water, to gather firewood, and to make social visits to neighboring camps (Marlowe, 2010; Pontzer et al., 2012; Raichlen et al., 2014).

In a recent study, we tracked physical activity using heart rate monitors attached to chest straps. This technique allowed us to determine how much time the Hadza spent in activities that stress their cardiovascular system. We know from experimental and epidemiological work that most health benefits accrue from exercise at moderate-to-vigorous intensity levels (moderate-to-vigorous physical activity or MVPA) accumulated in bouts of 10 minutes or more. We defined these by heart rate as a percentage of age-adjusted maximum heart rate (MVPA = 55-89% of max HR). We found that the Hadza spent about 75 minutes per day in MVPA, mostly in the moderate range of 55-69% of max HR. By contrast, humans in the US spend about 10 minutes per day, on average, in MVPA. US Department of Health and Human Services recommends adults average 150 minutes of MVPA per week. The Hadza meet US guidelines in just two days! What’s more, these patterns hold across both age and gender. What is also noteworthy, however, is that the Hadza spend a great deal of time resting as well. It seems that when they rest, they rest, and when they move, they are moving at moderate-to-vigorous intensities.

What does this mean for our evolutionary perspective? It does not suggest that we evolved to get 75 minutes/day of MVPA, nor does it mean that we can generate a hunter-gatherer workout in the same way that mimicking hunter-gatherer diets (i.e. the PaleoDiet) is a misguided application of evolutionary thinking to health. However, I believe that studies like ours can help us understand exercise in a health context in two important ways.

First, data from these studies can provide a new context to scientific explorations of exercise. Some people might be motivated to engage in exercise once they develop a deeper understanding of the ultimate evolutionary mechanisms underlying why exercise is so beneficial to human health. Second, these types of studies can point to novel directions for experimental research. This dataset provides a new way to view the types of activity-induced stresses experienced by hunter-gatherers, and therefore, model the types of stresses that may have increased physiological capacity during our evolutionary history. What we can take from our view of hunter-gatherers is that they are highly active, except when they are not. That is, when they are active, they seem to be engaged in activity at moderate to vigorous intensities, rather than lower intensity activity. This differs greatly from what we see in studies of adults living in industrialized societies, where much of our physical activity is registered at low intensities.

Thus, we might consider interventions that increase the intensity of everyday activities into the moderate-to-vigorous range. This is a fruitful area of experimental and epidemiological research, and one that may have a stronger impact on public health than repeated recommendations to achieve 150 minutes/week of aerobic exercise. For example, researchers have already begun to show that short bouts of MVPA can be beneficial to health (Glazer et al., 2013). By designing interventions that encourage people to walk faster during everyday activities- from their car to the store, for example – we might be able to have a positive impact and encourage people to stress their physiology in ways that are central to our evolutionary biology. In this way, evolutionary models of physical activity can play a key role in directing areas of research in exercise physiology and perhaps providing novel recommendations to improve public health. Future work should continue to expand our definitions of exercise and include evolutionary perspectives that may drive experimental interventions.


Glazer, N. L., Lyass, A., Esliger, D. W., Blease, S. J., Freedson, P. S., Massaro, J. M., … & Vasan, R. S. (2013). Sustained and shorter bouts of physical activity are related to cardiovascular health. Medicine and science in sports and exercise, 45(1), 109-115.

Lieberman, D. (2013). The story of the human body: evolution, health, and disease. Vintage.

Lieberman, D. E. (2015). Is exercise really medicine? An evolutionary perspective. Current sports medicine reports, 14(4), 313-319.

Marlowe, F. (2010). The Hadza: hunter-gatherers of Tanzania (Vol. 3). Univ of California Press.

O’Donovan, G., Lee, I. M., Hamer, M., & Stamatakis, E. Association of “Weekend Warrior” and Other Leisure Time Physical Activity Patterns With Risks for All-Cause, Cardiovascular Disease, and Cancer Mortality. JAMA Internal Medicine.

Pontzer, H., Raichlen, D. A., Wood, B. M., Mabulla, A. Z., Racette, S. B., & Marlowe, F. W. (2012). Hunter-gatherer energetics and human obesity. PLoS One, 7(7), e40503.

Raichlen, D. A., Wood, B. M., Gordon, A. D., Mabulla, A. Z., Marlowe, F. W., & Pontzer, H. (2014). Evidence of Lévy walk foraging patterns in human hunter–gatherers. Proceedings of the National Academy of Sciences, 111(2), 728-733.

Raichlen, D. A., Pontzer, H., Harris, J. A., Mabulla, A. Z., Marlowe, F. W., Josh Snodgrass, J., … & Wood, B. M. (2017). Physical activity patterns and biomarkers of cardiovascular disease risk in hunter‐gatherers. American Journal of Human Biology.

Troiano, R. P., Berrigan, D., Dodd, K. W., Mâsse, L. C., Tilert, T., & McDowell, M. (2008). Physical activity in the United States measured by accelerometer. Medicine and science in sports and exercise, 40(1), 181.

After solanezumab – where does Alzheimer’s disease research go from here?

After solanezumab – where does Alzheimer’s disease research go from here?

Jeremy Taylor

[See all essays on this Hot Topic]
A few weeks ago, pharmaceutical giant Eli Lilly announced that their latest Phase II trial for a drug named solanezumab, which is designed to flush beta-amyloid protein out of the brain and thereby ameliorate the symptoms of Alzheimer’s disease, had been a failure. This is a huge blow to conventional Alzheimer’s disease research because it comes on the back of more than a decade’s-worth of failed trials for drugs that either interfere with the chain of enzymatic reactions that make beta-amyloid, or remove it from the brain. Most of these trials were done with patients who were already in the advanced stage of the disease, and it may be too much to expect any treatment to be successful in the face of such widespread neuronal degeneration. This has led to research initiatives to identify cohorts of patients either in much earlier stages of Alzheimer’s disease, or of young, symptomless age but related to individuals who had succumbed to the familial, early-onset form of the disease. This solanezumab trial used patients with only mild cognitive impairment and yet it showed no statistical improvement in cognition in treated patients over placebo controls.

What does this failure mean for Alzheimer’s disease research? In what direction should it now go? Should the “amyloid hypothesis” now be abandoned? The overwhelming consensus in Alzheimer’s disease research has held it to be self-evidential that the tell-tale plaques of beta-amyloid protein between neurons and hyper-phosphorylated tau protein within neurons are not only pathological proof of Alzheimer’s disease but are the toxins that cause the disease in the first place. But it is becoming clear to anyone willing to acknowledge the evidence that this may be very far from the full story. Very recently, the 90+ study, run by the University of California at Irvine, produced evidence that many of our oldest-old die with substantial Alzheimer’s pathology in their brains but with fully-functioning preserved cognitive powers. It is the latest in a string of similar observations that dates back to Alzheimer research pioneers Bob Katzman and Bob Terry, at UCSD, in the 1980s and 90s. They similarly identified a cohort of the elderly who had died at a mean age of 85 years with intact cognition in brains riddled with amyloid, and, conversely, individuals who were diagnosed with Alzheimer’s disease who were found, on autopsy, to lack significant amyloid and tau pathology. Why were some brains more resilient to amyloid pathology than others? Katzmann and Terry thought it might have something to do with cognitive reserve. Resilient brains tended to be bigger brains and belonged to individuals in the upper centiles of intellectual performance. Maybe they lost synapses to amyloid but just had better brains, with more synapses, and, consequently, had more to lose and took longer to lose it? Their decline into dementia was just slower. This theme was returned to in 2004 by Nikolaos Scarmeas and Yaakov Stern in a paper titled “Cognitive Reserve: Implications for Diagnosis and Prevention of Alzheimer’s Disease.”

However, importantly, Bob Terry won the Potemkin neuroscience prize back in 1988 for counting cortical synapses from normally aged and Alzheimer’s diseased brains and showing that there were only weak correlations between density of plaques and tangles and psychometric tests of intelligence but much stronger correlations between those tests and synapse density. He further showed that loss of synapses was independent of the presence of amyloid in diffuse plaques and concluded that amyloid deposition was the result of synapse pathology, not the cause. Alzheimer’s disease was a disease of synapses, not of amyloid.

Several respected science communicators, including George Perry of the University of Texas, have accused the so-called amyloid lobby of persevering with amyloid and tau for no better reason than the fact that, ever since the days of the eponymous pioneer of neurodegenerative brain research Alois Alzheimer, amyloid plaques and tau tangles have been visible in brains via microscopy or medical imaging. Nevertheless, the amyloid lobby continues to test their hypothesis to destruction in trials still underway which administer anti-amyloid drugs to individuals thought to be at risk of Alzheimer’s disease well before any cognitive decline registers itself. They are trying to intervene at ground zero. But, in the search for the initial pathology of Alzheimer’s disease, will we find that beta-amyloid and tau are even relevant? What other processes and agents deserve much greater attention? What really causes these brains to start dying in a more profound and accelerated way than can be laid at the door of the normal ageing process?

The more I read about research into Alzheimer’s disease the more I am reminded of the old Indian parable of the blind men and the elephant. Twelve blind men are stood around the beast at intervals and are requested to describe and identify it based only on what they can make of the small portion of its anatomy that lies within their hands’ grasp. Of course, none of them can take on board what the others are feeling, there is no overall picture, and so they end up in total disagreement, and in no little ignorance as to what the beast actually looks like.

Let us think about amyloid a little further. We know it is present in neurons because it has a clearly defined evolved function in regulating transmission of impulses along neuronal networks – supporting long term potentiation, which is involved in the storage of memory at synapses, and regulating over-excitation within neural networks. And it is commonly asserted that the slightly longer-chain Aß-42 molecules are more toxic than Aß-40 and only when they form into certain types of oligomers. Rebecca Rosen et al, in a paper titled “Comparative Pathobiology of Aβ and the Unique Susceptibility of Humans to Alzheimer’s Disease”, question why it is that humans appear uniquely susceptible to the neurodegeneration and dementia of Alzheimer’s disease despite the fact that all primates deposit copious Aß in senile plaques and accumulate cerebral amyloid-β angiopathy as they grow old. And despite the fact that the amino-acid sequence of beta-amyloid is identical in all primates – including humans – so far studied. Also, transgenic rodent models engineered to overproduce human-sequence beta-amyloid develop profuse senile plaques and cerebral amyloid-β angiopathy, but they do not have substantial AD-like neuronal cell loss, neurofibrillary tangles, and profound memory impairment. They conclude with the possibility that the only between-species differences they could find – subtle differences in the tertiary structure of beta-amyloid – the three-dimensional geometry of protein chain folding – might explain why beta-amyloid is toxic to humans but not to any other species.

But dissecting beta-amyloid in ever increasing detail like this still leaves us with the fundamental question: Is it the accumulation of beta-amyloid into plaques, and the subsequent formation of hyper-phosphorylated tau protein tangles inside neurons, that are the initiating events for Alzheimer’s disease, or not? Here it is important to distinguish between familial Alzheimer’s disease and sporadic Alzheimer’s disease. The former represents less than 5% of all AD cases and is caused by well-known mutations to genes like APP or the presenilins, which are involved in the chain of enzymatic reactions that form beta-amyloid. If you bear any of these mutations you will succumb to the disease – it is deterministic. The vast majority of cases of Alzheimer’s are the sporadic form which tells us that, whatever genes might be involved, the environment is a major factor. Central to this observation is the establishment, over the last 20 or 30 years, that no satisfactory answer to the riddle of Alzheimer’s disease will ever be found unless we take the role of the immune system, and the inflammation caused by innate immunity, into account.

A number of researchers hold that, while inflammation is an important factor in Alzheimer’s disease, it is secondary to the production of amyloid and tau in the brain. That it is the production of amyloid and tau that elicits inflammation. But it looks increasingly likely that the opposite is true.

Back in the 1980s, Sue Griffin used Down syndrome to investigate Alzheimer’s disease. Down syndrome brains accumulate amyloid at premature age because of the extra copy of chromosome 21 on which the APP gene sits. Nevertheless, Griffin showed that Down syndrome brains produce large amounts of the inflammatory cytokine interleukin-1 (IL-1) many years before plaque formation, suggesting that stressed neurons lead to inflammation and innate immune activity in the brain, production of inflammatory markers, and eventually excess amyloid and tau.

The importance of innate immune system activity in the brain was heavily underscored a few years ago by 3 genome-wide association studies which found no effect for the main genes involved in the pathways that form beta-amyloid and tau, but were dominated by genes involved in the immune system.

Research by Clive Holmes and Hugh Perry in Southampton has established that peripheral infection can send signals to the brain which accelerate immune activity there, heighten the symptoms of Alzheimer’s disease, lead to cognitive deficits, and prime microglia – the brain’s immune cells and the equivalent to macrophages – so that they are capable of attacking and damaging neurons. Their research has been borne out in a mouse model by Irene Knuesel and Dimitrij Krstic which mimicked peripheral viral infections and showed increases in inflammatory mechanisms in the brain, priming of microglia, degenerating neurons and only then production of amyloid and tau.

What key events occur at the synapse years before any signs of cognitive impairment begin to emerge? Some researchers believe that beta-amyloid is the prime culprit in these early days but their work is countered by fascinating evolution-minded research by Beth Stevens at Harvard and her former colleague Ben Barres. Picking up from those earlier conclusions that synapse loss correlates better than amyloid with AD cognitive symptomatology, Hong et al (co-authors include Stevens, Barres and Dennis Selkoe) show in a series of mouse models that another major part of the innate immune system – complement – together with immune cells called microglia – are heavily involved in initiating events at the synapse that precede amyloid deposition. The initiating protein of the complement cascade – C1q – is first associated with synapses and experiments that inhibit it show that C1q is necessary for any toxic effect of beta-amyloid on synapse function and long-term potentiation in the hippocampus. Similarly, when the complement receptor CR3 is silenced on microglia they stop phagocytically engulfing synaptic material.

Stevens, Barres, and their associates remind us that evolution has co-opted the complement cascade as the mechanism by which neural networks are adaptively pruned during adolescence and brain development and as a response to later learning. C1q paints synapses that are scheduled for demolition and reacts with proteins on these cell surfaces to form the complement protein C3 which is recognised by CR3 on microglia which then steam in for the kill. Most of the body’s cells are protected against this unwanted intrusion by complement because they are bristling with complement inhibitors. Neurons are the exception. They lack these inhibitors for the very reason that they have to be open to complement attack otherwise selective pruning could never occur. It is an Achilles heel which shows up in late-onset Alzheimer’s disease because Stevens, Barres et al believe the roots of Alzheimer’s disease are laid when this evolved method for synaptic pruning is re-awakened maladaptively in later life. It may be, they say, that soluble beta-amyloid has a role here in that it could bind to synapses and weaken them, providing the complement cascade with a signal for elimination.

Not surprisingly, in the light of all this, a group of scientists in the UK, led by Prof. Paul Morgan of Cardiff University, have published research which suggests that complement proteins can provide reliable early markers for onset of Alzheimer’s disease, specifically to allow physicians to distinguish between individuals with mild cognitive impairment who will convert to Alzheimer’s from those who will not.

The gene that we know for sure increases your chance of contracting Alzheimer’s by up to ten times is a variant of APOE – epsilon 4. And while APOE is involved with a number of processes in the brain that also involve beta-amyloid, there are a number of other Alzheimer’s producing processes in which APOE4 acts independently. Because it is involved in cholesterol transport, APOE is vital for maintaining neurons and their synapses, and the epsilon 4 variant impairs this. Carriers of APOE4 have thinner entorhinal cortices and hippocampi, and APOE4 frequently increases inflammation in the brain and primes toxic microglia. It is known that another variant of APOE – epsilon 2, is protective of Alzheimer’s disease and it was assumed that APOE2 carriers with somewhat preserved cognition would consequently be found to have been relatively free of amyloid pathology. But the group who run the 90+ Study at UC Irvine have discovered that while, in the oldest-old, the presence of APOE2 was associated with a somewhat reduced risk of dementia, it was also, paradoxically, associated with increased AD neuropathology. Therefore, they conclude, oldest-old APOE2 carriers may have some mechanism that contributes to the maintenance of cognition independently of the formation of AD pathology and specifically note that APOE2 carriers have preserved synaptic function.

It is too early to abandon the so-called amyloid hypothesis. Soluble beta-amyloid or oligomers of beta-amyloid 42, and aberrant tau protein, are clearly neurotoxic and important. But they may not be instigatory. The amyloid hypothesis, at the very least, is undergoing substantial revision as the long history of blinkered over-attention to tell-tale plaques and tangles gives way to the nuances of environmental factors and innate immune responses in brain and body and the important distinctions between early-onset familial AD and the majority late-onset sporadic AD come home to roost. In the following two commentaries, Caleb Finch draws attention to the possible role of smoking and atmospheric pollution, while Robert Moir rehabilitates the amyloid “bad boy” by showing its evolved importance as a potent antimicrobial – thereby opening the door to a possible infection etiology for Alzheimer’s disease. 35 million people world-wide are living in the twilight world of Alzheimer’s disease without the ghost of a cure in sight, despite the investment of many billions of dollars. We owe it to these Alzheimer’s sufferers – in the US alone a new case gets diagnosed every 68 seconds – to broaden the church of AD research in such ways – and allow this new research to present effective targets for treatment. It is long overdue.

Environmental Smoke in Alzheimer’s Disease

Environmental Smoke in Alzheimer’s Disease

Caleb E. Finch

Caleb E. Finch

Leonard Davis School of Gerontology and Dornsife College, University of Southern California, Los Angeles CA



Environmental influences on Alzheimer’s disease (AD) are under appreciated. The 25-year search for AD genes has clearly shown that dominant familial genes for early AD account for a small minority of cases less than 5% (Tanzi 2013). The largest common risk factor is the APOE4 allele which may account for another 15-20% of cases, mainly in women (Finch and Shams 2016). Human E4 carriers and mouse AD models show increased levels of the amyloid deposits, with female excess (Barnes 2005; Cacciottolo et al. 2016a). Major efforts continue to find new gene risk factors, which are generally rarer and of lower risk than ApoE4 (Tanzi 2013).

Tobacco smoking is also recognized as an environmental risk factor for AD by epidemiological studies: a meta-analysis of 23 prospective studies attributed 11% of later onset AD to smoking (Barnes and Yaffee 2011). Correspondingly, an AD mouse showed increased brain amyloid from short term tobacco smoke (Moreno-Gonzalez et al. 2013).

A new, but familar smoke may also be relevant. Automotive traffic derived air pollution (TRAP) is associated with increased dementia risk (Oudin et al 2016; Jung et al 2015). We extended these findings with the WHIMS cohort, in which older women residing in zones with PM2.5 from TRAP above the EPA standard of 12 ug/m3 had a 70% higher risk of dementia. Moreover, apoE4 carriers had up to 4-fold higher risk. At a population level, about 20% of dementia may be attributable to excess TRAP exposure. Correspondingly in an experimental model for exposure to TRAP, mice carrying human FAD genes in combination with human ApoE4 had higher brain amyloid than E3FAD mice (Cacciottolo et al. 2016b). Thus chronic inhalation of carbonaceous air particulates from fossil fuels or leaf tobacco show a similar magnitude of risk for AD (10-20%), and similar amyloidogenic responses of mouse models.

I suggest that these findings may guide the selection of AD patients or those at risk in future clinical trial. While the apoE genotype is under consideration in AD drug trials, there has been no mention of tobacco smoking or exposure to air pollution. The Alzheimer field recognizes the huge complexity of processes in AF that begin decades before clinical symptoms. We may need to expand thinking further with gene-environmental interactions. Lastly, I note that global human exposure to toxic carbonaceous particles from tobacco or fossil fuels is very recent, within 5-10 generations. Given the apparent absence of severe AD-like neurodegeneration in great apes (Finch and Austad 2015), one may ask: is AD a modern disease in association with these evolutionarily novel toxins?

Acknowledgements: I am grateful for support by the Cure Alzheimer’s Fund and the NIH (R01 AG051521; R21-AG040683). As a founder of Acumen Pharmaceuticals, I have received no support for these studies or any input in writing this essay.


Barnes LL, Wilson RS, Bienias JL, Schneider JA, Evans DA, Bennett al. .2005. Sex differences in the clinical manifestations of Alzheimer disease pathology. Arch. Gen. Psychiatry. 62, 685–691.


Barnes DE, Yaffe K. 2011. The projected effect of risk factor reduction on Alzheimer’s disease prevalence. Lancet Neurol. 10:819-28.

Cacciottolo M, Christensen A, Moser A, Liu J, Pike CJ, Sullivan PM, Morgan TE, Finch CE. 2016. The APOE4 allele shows opposite sex bias in microbleeds and Alzheimer‘s Disease of humans and mice. Neurobiol Aging, 37:47-57.


Cacciottolo M, Wang X, Driscoll I, Woodward N, Saffari A, Reyes J, Serre ML, Vizuete W, Sioutas C, Morgan TE, Gatz M, Chui HC, Shumaker SA, Resnick SM, Espeland MA, Finch CE, Chen JC. 2016. Particulate air pollutants, APOE alleles, and their contributions to cognitive impairment in older women and to amyloidogenesis in experimental models. Transl Psychiatr. in press.

Finch CE, Austad SN. 2015. Commentary: is Alzheimer’s disease uniquely human?Neurobiol Aging. 36:553-555.


Finch CE, Shams S. 2016. ApoE and sex bias in cerebrovascular aging of men and mice. TiNS 39:625-37.


Jung CR, Lin YT, Hwang BF. 2015. Ozone, particulate matter, and newly diagnosed

Alzheimer’s disease: a population-based cohort study in Taiwan. J Alzheimers Dis. 44:573-84.


Oudin A, Forsberg B, Adolfsson AN, Lind N, Modig L, Nordin M, Nordin S,

Adolfsson R, Nilsson LG. 2016. Traffic-Related Air Pollution and Dementia Incidence in Northern Sweden: A Longitudinal Study. Environ Health Perspect. 124:306-12.


Tanzi RE. 2013. A brief history of Alzheimer’s disease gene discovery. 33 Suppl 1:S5-13.

Antibiotics as panacea, or as opening Pandora’s box?

Antibiotics as panacea, or as opening Pandora’s box?

Welcome to HOT TOPIC, Evmedreview’s latest special feature of compelling, in-depth articles from major voices in the field of evolutionary medicine, highlighting urgent problems in the world of medicine today that evolutionary medicine has either identified, or upon which it is shedding some new light, and where it may be able to contribute to solutions. This inaugural article is written by Prof. Martin J. Blaser, of the New York University School of Medicine. We have known for some time that overuse of antibiotics can lead to multiple antibiotic resistance. But Blaser here draws our attention to, and describes in fine detail, the way in which over-prescription of antibiotics is gradually depleting human microbiomes and may be seeding a generation-by-generation growth of a wide spectrum of life-shortening diseases in our children. Scroll to the end to see the interesting comments  and add your own now, or send us a potential post at

The long-term risks of antibiotic treatment in childhood: Antibiotics as panacea, or as opening Pandora’s box?

Martin J. Blaser

By Martin Blaser, M.D.

Muriel G. and George W. Singer Professor of Translational Medicine
Director, Human Microbiome Program
New York University Langone Medical Center
New York, NY 10016

Magic Bullets.

The development of antibiotics was one of the greatest discoveries of the 20th century, and arguably the most important in the field of medicine and health (1). Not only can antibiotics be used to treat diseases that were previously untreatable, but they provide the safety net without which surgery, chemotherapy for cancer, and transplantation would have markedly heightened risk or be impossible.

In consequence, essentially since their widespread introduction in the years following World War II, the notion that antibiotics are miraculous has been a part of the general idiom, to both health professionals and the public alike. Thus, not surprisingly, antibiotics have been used more and more, for all manner of purposes—in the clinic, on the farm, in the aquarium. Their direct use in people worldwide was estimated at more than 70 billion doses annually (2), or 10 doses for every man, woman, and child on Earth. In the United States, about 262 million courses were used in 2011, a rate of 842/1000 population (3), more than five courses for every six people. For young children, rates are even higher, estimated as 1.35/year for US children in the first 2 years of life, representing nearly 3 courses during that time, and about 10 courses by the age of 10 (4).

This enormous use has been predicated on a conceptual framework of few or no substantial risks to the individual from taking antibiotics. As such, any perceived benefit, however small, is considered an indication for antibiotic use. Thus, to both physicians and patients, why not try an antibiotic? “Can’t hurt and it might help!”

2. Bacteria, our ancient companions, as our partners.

Bacteria were here first on this planet, evolving about 4 billion years ago. All known forms of life evolved from bacteria. Further, all of this subsequent life evolved in the presence of bacteria. Thus, the very existence of all plants and animals on earth is based on their ability to control or harness adjacent bacteria, whether in or on them or nearby.

All animal species have their own unique residential microorganisms. These organisms, which we refer to as the microbiota, live in and on their host, and when the intersecting metabolic pathways of microbes and host are included, the constellation has been referred to as the microbiome. In large hosts like humans, each of the multiple physiologic niches includes its own microbiome.

In animals, there is an important vertical component to the inheritance of each host’s microbiome. Stated differently, in addition to our human genome that we inherit from our parents, each of us inherits much of our microbiome from our mother. Recent studies of primates show strong co-speciation of hosts and microbes, representing a span of about 15 million years of hominid evolution (5, 6). This is consistent with studies more broadly across mammals, illustrating similar conservation over even longer time spans (7).

Thus, the genes we inherit from mom are not just human genes, but they are microbial. Viewed in this way, our microbiome represents a portion of our individual genetic endowment, as well as a component of our gene pool (8). The tension between vertical (8) and horizontal transmission of our microbiome is important, but most current data suggest that among long-term microbial residents, vertical predominates (9).

One further point is that even though babies inherit much of their vast microbiota from mom, the initial community structure is quite different from that of adults. However, by the age of 3 years, it becomes much more adult-like in its structure (10). Thus, the first three years of life are when the predominantly vertically acquired microbiome is developing its adult form. It is also the time when babies are developing their immunity, metabolism, and cognition.

As such, the first three years of life are a most critical time for human development. One hypothesis is that the development of a normally maturing microbiome affects physiological processes in salutary ways. We can conceive of a situation in which the initial microbiota may provide contextual instructions to the immune system to distinguish between self and non-self, adding the nuances of grey to a black/white dichotomy. Similarly, the infant must lay down the appropriate amount of adipose tissue, appropriate to its nutritional milieu, that will optimize the relationship between energy utilization and storage that will be a determinant of reproductive success. For example, if a young individual builds greater capacity for energy storage, it can better survive famines, but if it puts more into muscle and bone, it can fight and hunt better; this is a classical trade-off. Similarly, in social animals, the brain of the growing infant must set a cognitive pathway about how open or closed to interpersonal signaling they will be as they mature. There is widening evidence that the early life microbiome is a participant in the dialogue that determines how the host makes these immunologic, metabolic, and cognitive decisions. But the developing microbiome, crucial in the early life window of development, has limited resilience, and is vulnerable to perturbation (8, 11).

3. How antibiotics affect our bacterial partnerships.

We can especially focus on antibiotics as key agents causing micro-ecological change, because their use is so pervasive. Antibiotics were generally designed and used to eliminate single pathogens causing infections; doses were selected to achieve blood levels that inhibit the pathogen’s replication. However, there was little or no consideration of their effects when applied to the diverse microbiota colonizing each host. Such interactions were considered to be off-target, and in the short-term were generally mild, causing GI tract upset, skin rashes, or overgrowth by yeasts, for example. Usually there were no clinical effects at all. It was this apparent safety that lulled professionals and lay-people alike into what we have called ‘antibiotic sleep’ (12).

Yet the question remained, could off-target effects have long-term consequences?

Paradoxically, the answer came 70 years ago, near the beginning of the antibiotic era with strong evidence, and yet until recently it was missed (13, 14). The answers came from the practices of farmers who recognized that feeding antibiotics (generally in low doses for prolonged time periods) to their livestock promoted their growth (15). These widespread and extensively validated effects indicate that exposure to antibiotics changed the development of the recipients. It was a profound point, but the larger implications for human health were missed.

Collectively, the farmers made four crucial observations:

  1. Antibiotics worked in cows, swine, fish, chickens, and turkeys, among other species. This is a wide swath of vertebrate evolution. That it was not host species-specific indicated that the antibiotic exposure affected a broad and common principle.
  1. Virtually any anti-bacterial agent was effective, regardless of chemical composition, class, structure, or spectrum, but anti-virals and anti-fungals had no effects. The same anti-bacterial agents worked across multiple animal species, indicating that it was their anti-bacterial effects, not any specific activities of each compound that were the key to their effectiveness.
  1. Importantly, the younger the animals were when the antibiotics were started, the greater the effects—on growth rate, and on feed efficiency—the ability to convert food calories into body mass, which after all is what farmers are trying to do. This indicates that the process affected is developmental. Conversely, the later in life it was started in the animals, the lower the effect. This observation provides evidence that there may be a crucial ‘window’, the period of time during which an animal is susceptible to the antibiotic effects.
  1. Agents given orally were more effective for growth promotion than those given parenterally.
  1. Long-term health risks from perturbing our bacterial partnerships during childhood.

Taken together, these observations point to the importance of the bacteria of the gastrointestinal tract, across animal species, early in life, as the principal targets of the antibiotics, and as the principal intermediates to explain the efficacy of growth promotion. My laboratory has conducted studies in experimental animals that indicate that antibiotic use perturbs the intestinal microbiota and that it is the altered microbiota that is both necessary and sufficient to confer the effects on growth and metabolism (16-19). Parallel studies in other mouse models indicate activities that affect immunological development and disease (20).

In total, these observations are consistent with a role for antibiotics in the rise of many diseases that have their origins in childhood that are affected by altered immunological, metabolic, or cognitive processes. These include (but are not limited to) disorders that are primarily metabolic (obesity and type-2 diabetes), immunologic (asthma, allergies, juvenile (type-1) diabetes, inflammatory bowel disease), and cognition (autism and attention deficit disorder). These in fact are many of the diseases that have increased in incidence or have become epidemic around the world in recent decades.

With this theoretical and experimental background, a growing body of epidemiologic studies of human children have addressed the question of whether in fact antibiotic exposures are associated with the later development of these diseases. In brief, although the many studies differ in the diseases studied, their size, locales, definitions used, study designs, and statistical tools, there is substantial consistency showing positive associations (21-33).

Based on the totality of the evidence, I believe that we will find that every dose of an antibiotic given to young children has a delayed cost. For example, there might be an x% cost of asthma, y% cost of juvenile diabetes, and z% cost of inflammatory bowel disease. Each exposure might confer multiple costs, and my theory is that the costs are cumulative across exposures. However, we do not yet know what is the critical age window, nor the amounts for x, y, and z. Yet data are beginning to clarify the picture. A recent large study, involving all Danish children born over a nine-year period, showed that each antibiotic course was associated with an 18% increase in the risk of childhood-onset Crohn’s disease compared to untreated controls (23). In several epidemiological studies, the highest risks for later illnesses were associated with exposures in the first six months of life (26, 27), which is not surprising.

It is likely that the exact costs will vary in different populations, reflecting the nature of the status quo ante microbiome, which varies across populations (10, 34, 35), effects of maternal pre-partum antibiotics (36, 37), the extent of Cesarean delivery (21-25), the specific antibiotics used (38), and the particular disease risk of highest concern. Further, variations in health outcome may also occur because a perturbed microbiome is not the only factor driving to disease.

  1. Damage down the generations, and solutions.

Finally, and perhaps most worrisome is that antibiotics given in one generation might affect the health in the next and future generations. We already know that certain medicines given during pregnancy can adversely affect the health of the next generation. There is growing evidence of associations of maternal antibiotic use with particular outcomes (36, 37, 39, 40). However, this must be clearly sorted out since any observed associations might reflect the underlying infections for which the antibiotics were given. Yet, antibiotic use during pregnancy and even before (36, 37) will impact the maternal microbiome, just before the hand-off to the next generation. The girls of today are the mothers of tomorrow, and antibiotic exposures have the potential to affect their microbial compositions in permanent ways. It is important to reiterate that antibiotics are not the only factor that could affect the early life microbiota development and transfer to the next generation. Others include a variety of modern foods and food additives (e.g. emulsifiers, artificial sweeteners) (41, 42), and practices related to pregnancy and delivery (e.g. prophylaxes, Cesarean section, antibacterial washes).

We have hypothesized that the changes in microbiome are cumulative across recent human generations, reflecting a stepping down in biodiversity (14). If this is correct, and evidence is accumulating that it is (10, 34, 43-45), then we must halt the decline, and reverse it through restorative steps (35). I predict that the health practices of the future will involve restoring particular “missing microbes” to young children, based on the microbial needs of all children, and the needs of that specific child (46, 47).

In any event, the doctors of the future will need to take into consideration antibiotic cost data vis a vis the potential benefits in making therapeutic decisions. There are many infections that must be treated, but also a large number for which the benefit is marginal or nil. As in so many other areas of medicine, doctors will need to calculate potential benefit versus potential risk in the patient sitting in front of them, considering the future as well. As our knowledge of the costs becomes more precise, this will become increasingly necessary.

We must alter our views of the “antibiotic umbrella”, under which most of medicine is conducted. Doctors will have to improve their clinical skills to minimize antibiotic exposures unless necessary. There already is enormous heterogeneity in prescribing practices (3, 48-50), so some doctors already are there, while others lag substantially. In Sweden, per capita antibiotic use is about 40% of that in the USA (51), so change is not impossible. But change we must.

Acknowledgments. Supported by R01DK090989 and U01AI22285 from the National Institutes of health, and by the Ziff Family, Knapp, and the C & D funds. I thank Tiffany Archuleta and Joyce Ying for bibliographic support.


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